Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs11974373 chr7:64119881 C/T 0 174 22.57 21.98 2.4 KM Plot
UCEC rs11978787 chr7:64182184 G/A 0 174 22.57 21.98 2.4 KM Plot
UCEC rs1202394 chr7:148916044 A/C 8.44E-12 174 2.82 22.63 22.57 KM Plot
UCEC rs12053420 chr2:127442223 A/G 6.86E-12 174 4.33 22.68 22.2 KM Plot
UCEC rs12110634 chr6:5111429 C/A 3.57E-9 173 22.75 23.35 5.97 KM Plot
UCEC rs12111219 chr6:5111352 G/A 3.57E-9 173 22.75 23.35 5.97 KM Plot
UCEC rs12122 chr12:49334762 C/G 0.000129 174 22.63 21.85 7.93 KM Plot
UCEC rs12147684 chr14:75383255 G/A 0 171 22.8 19.57 1.03 KM Plot
UCEC rs12191255 chr6:5121891 G/A 3.2E-9 174 22.7 23.35 5.97 KM Plot
UCEC rs12195956 chr6:5111680 C/T 3.57E-9 173 22.75 23.35 5.97 KM Plot
UCEC rs12202160 chr6:5110230 T/C 3.2E-9 174 22.75 22.63 5.97 KM Plot
UCEC rs12202384 chr6:5109998 C/A 3.2E-9 174 22.75 22.63 5.97 KM Plot
UCEC rs12204490 chr6:5111902 T/C 3.57E-9 173 22.75 23.35 5.97 KM Plot
UCEC rs12206845 chr6:5110176 G/A 3.2E-9 174 22.75 22.63 5.97 KM Plot
UCEC rs12206931 chr6:5122859 C/T 3.2E-9 174 22.7 23.35 5.97 KM Plot